Getting Started With | Function Arguments Used in | Determination of Effective Resistance Genes | Plotting Rps Summary Data | Pathotype Complexities | Plotting Complexities Data | Diversity Indices, Frequency of Unique Pathotypes and Individual Isolate Pathotypes | Table of Diversities | Table of Individual Pathotypes | Advanced Plotting | {hagis} autoplot() Objects | Changing the ggplot2 Theme | Changing the Font | Make a Horizontal Plot | Use Colors in Autoplot Objects | Sorting the x-axis

Load Packages | Convert the Dataset to a Binary Data Matrix | Perform Principle Coordinates Analysis (PCOA) | Add Metadata to your PCOA Data | Statistical Tests for Beta Diversity | Permutation Based Analysis of Variance (PERMANOVA) and Beta-dispersion Analyses | Beta-Dispersion | Permutation Based Analysis of Variance (PERMANOVA) | Analysis of Similarity (ANOSIM)