Package: hagis 3.1.12

Adam H. Sparks

hagis: Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity

Analysis of plant pathogen pathotype survey data. Functions provided calculate distribution of susceptibilities, distribution of complexities with statistics, pathotype frequency distribution, as well as diversity indices for pathotypes. This package is meant to be a direct replacement for Herrmann, Löwer and Schachtel's (1999) <doi:10.1046/j.1365-3059.1999.00325.x> Habgood-Gilmour Spreadsheet, 'HaGiS', previously used for pathotype analysis.

Authors:Austin G. McCoy [aut, ccp], Zachary Noel [aut, ccp], Adam H. Sparks [aut, cre], Martin Chilvers [aut, ths], Jari Oksanen [aut], Zhian N. Kamvar [ctb, rev], Michigan Soybean Promotion Committee [fnd], Project GREEEN [fnd], North Central Soybean Research Program [fnd], GRDC Project DAQ00186 [fnd]

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Peer review:

Bug tracker:https://github.com/openplantpathology/hagis/issues

On CRAN:

plant-pathologypathotypepathogen-surveyvirulence analysisdifferential setassessment scalepathotype-complexitiesplant-diseasepopulation-diversities

7 exports 1 stars 1.48 score 32 dependencies 7 scripts 407 downloads

Last updated 4 months agofrom:c4e7324abe. Checks:OK: 7. Indexed: yes.

Exports:autoplotcalculate_complexitiescalculate_diversitiescreate_binary_matrixdiversities_tableindividual_pathotypessummarize_gene

Dependencies:clicolorspacedata.tabledigestfansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepanderpillarpkgconfigR6RColorBrewerRcpprlangscalestibbleutf8vctrsviridisLitewithr